EXTRACTION AND PURITY DNA OF Culex spp MOSQUITO IN KEMELAK VILLAGE, BINDUNG LANGIT, OGAN KOMERING ULU
DOI:
https://doi.org/10.24233/biov.7.2.2021.217Keywords:
Culex , extraction DNA , moleculer , concentration and purity of DNAAbstract
Culex spp are mosquito vectors that have a very wide distribution capability and are carriers of pathogens that can interfere with human and animal health. The wide distribution makes Culex spp a dangerous threat. DNA extraction is one of the important steps in obtaining genetic information and genetic analysis. Good quality DNA is used for activities such as the use of molecular markers, genome library creation, and sequencing. This study aims to determine the quality, concentration and purity of Culex spp mosquito DNA in Kemelak Bindung Langit Village, OKU Regency. It is hoped that the sample can be used for further research analysis on Mitochondria D-Loop Sequences in Culex spp mosquitoes. Quantitative measurement of DNA in the form of concentration and purity of DNA using Nanodrop Thermo cycle while qualitative DNA using electrophoresis technique. The results of the isolation of the mosquito genome DNA, obtained clear DNA bands without any degradation (smear) and the concentration results for the four samples ranged from 10-100 ng/µL and the DNA purity was good, ranging from 1.8 to 2.00.
Last Year PDF Downloads
References
X. Feng, V. L. D. Amo, E. Mameli, M. Lee, A. L. Bishop, N. Perrimon and V. M. Gantz, “Optimized CRISPR tools and site-directed transgenesis towards gene drive development in Culex quinquefasciatus mosquitoes”, Nature Communications, Vol. 12, No. 1, PP. 1-13, 2021.
S. Sabesan, P. Vanamail, K. H. K. Raju, and P. Jambulingam, “Lymphatic filariasis in India: epidemiology and control measures”, Journal Postgrad. Med, Vol. 56, No. 3, PP. 232–238, 2010.
T. G. Andreadis, J. F. Anderson, C. R. Vossbrinck, and A. J. Main, “Epidemiology of West Nile virus in Connecticut: a five-year analysis of mosquito data 1999–2003”, Vector-Borne Zoonotic Dis, Vol. 4, No. 4, PP. 360–378, 2004.
D. M. Fonseca, J. L. Smith, R. C. Wilkerson, and R. C. Fleischer, “Pathways of expansion and multiple introductions illustrated by large genetic differentiation among worldwide populations of the southern house mosquito”, Am. J. Trop. Med. Hyg, Vol. 74, No. 2, PP. 284–289, 2006.
S. N. Okiwelu, and M. A. E. Noutcha, “Breeding sites of Culex quinquefasciatus (Say) during the rainy season in rural lowland rainforest, Rivers State, Nigeria”, Public Health Research, Vol. 2, No. 4, PP. 64–68, 2012.
F. N. Aputri, Y. Windusari, D. Septiawati, L. Hanum, A. Imsya, R. Palupi, and F. N. L. Lubis, “Preference For Landing And Bitting Of Mosquitoes Based On Blood Type: Case study in the Kemelak Bindung Langit Village, Ogan Komering Ulu District, South Sumatra. 7th International Conference-Sustainable Agriculture, Food and Energy (SAFE2019)”, Phuket, Rajabhat University, Thailand, October 18-21, 2019.
Yuwono, Biologi Molekuler. Jakarta: Erlangga, 2005.
M. Dairawan, P. J. Shetty, “The evolution of DNA extraction methods”, America Journal of Biomedical Science and Research, Vol. 8, No. 1, PP. 39-46, 2020.
G. Hoarau, J. A. Coyer, W. T. Stam, J. L. Olsen, “A fast and inexpensive DNA extraction/purification protocol for brown macroalgae”, Molecular Ecology Notes, Vol. 7, No. 2, PP. 191-193, 2007.
Y. Lin, J. Yanhua, L. Qingjiao, S. Zhe, W. Lianzhu, Z. Yuxiu, “A comparison of eight methods for DNA etraction from processed seafood products”, Food Science and Technology Research, Vol. 22, No. 6, PP. 751-757, 2016.
D. Dwiyitno, S. Hoffman, K. Parmentier, C. V. Keer, “Method comparison of DNA isolation and quantification for fish and seafood authenticity determination”, Squalen Bulletin of Marine and Fisheries Postharvest and Biotechnology, Vol. 13, No. 3, PP. 115- 124, 2018.
J. Sambrook, E.F. Fritsch, T. Maniatis, Molecular Cloning Laboratory Manual 3rd Ed. New York: Cold Spring Harbour Lab. Press, 1989.
S. Fatchiyah, E. L. Widyarti, Arumningtyas, and S. Permana, Practical Book of Molecular Biology Analysis Techniques. Malang: Universitas Brawijaya, 2012.
WHO, Mannual on Practical Entomology In Malaria Part II. The WHO Division of Malaria and Other Parasitic Disease, 1976.
C.T. O’connor, and T. Sopa, A Checklist of The Mosquitoes of Indonesia. U.S: Naval Medical Research Unit, 1981.
H. Chen, M. Rangasamy, S. Y. Tan, H. Wang, B. D. Siegfried, “Evaluation of five methods for total DNA extraction from western corn rootworm beetles”, PLoS One, Vol. 5, No. 8, PP. 1-6, 2010.
Westermeier, Electrophoresis in Practice: A Guide to Theory and Practice. New Jersey (US): John Wiley & Sons Inc, 2004.
E. D. Nugroho, D. A. Rahayu, Introduction to biotechnology (theory and application). Yogyakarta: Penerbit Deepublish, 2017.
S. K. Sahu, M. Thangaraj, K. Kathiresan, "DNA Extraction Protocol for Plants with High Levels of Secondary Metabolites and Polysaccharides without Using Liquid Nitrogen and Phenol", International Scholarly Research Notices, Vol. 2012, PP. 1-6, 2012.
M. Alaey, R. Naderi, A. Verzaei, A. Khalighi, A. Salami, “Comparing study between four different methods of genomic DNA extraction from Cyclamen persicum Mill”, International Journal of Agriculture and Biology, Vol. 7, No. 6, PP. 882-884, 2005.
L. Hanum, Y. Windusari, A. Setiawan, Muharni, and F. Adriansyah, “Comparison of CTAB Method and Wizard Genomic DNA Purification System Kit from Promega on DNA Isolation of Local Varities of Rice of South Sumatera”, Science and Technology Indonesia, Vol. 3, No. 1, PP. 24-29, 2018.
A. A. Setiaputri, G. R. Barokah, M. A. B. Sahaba, R. D. Arbajayanti, N. Fabella, R. M. Pertiwi, M. Nurilmala, R. Nugraha, A. Abdullah, “Comparison of DNA isolation methods in fresh and processed fishery products”, Indonesian Journal of Fishery Products Processing, Vol. 23, No. 3, PP. 447-458, 2020.
Kapa Biosystems, 2014, KAPA2G Fast HotStart PCR Kit Technical Data Sheet [internet]. Kapa Biosystems Inc., Wilmington, MA, Available from: https://www.kapabiosystems.com/assets/KAPA2G_Fast_HotSt art_TDS.pdf, 2021
M. Iqbal, D. B. Ibnu, K. Nia, “Comparative analysis of DNA isolation methods for the detection of White Spot Syndrome Virus (WSSV) in Vaname shrimp. (Litopenaeus vannamei)”, Journal of Marine Fisheries. Vol. 8, No. 1, PP. 54-65, 2016.
PDF Downloads: 293
Published
How to Cite
Write scientific names with Italic fonts:
Issue
Section
Copyright (c) 2021 Farah Nuriessa Aputri, Laila Hanum, Ayu Safitri, Yuanita Windusari
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Authors who publish with this journal agree to the following terms:
a. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution-ShareAlike 4.0 International License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
b. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
c. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).
d. Authors hold the copyright and retain publishing right of articles without restrictions.