ISOLATION AND PURITY DNA FROM LEAF STORAGE OF Lansium domesticum CORRESPOND FOR BARCODING ANALYSIS

Authors

  • Nur Arifah Department of Bioscience Program, Faculty of Mathematics & Natural Sciences, Sriwijaya University, Jalan Padang Selasa 524, Palembang, South Sumatra 30139, Indonesia
  • Laila Hanum Department of Biology, Faculty of Mathematics & Natural Sciences, Sriwijaya University. Jalan Raya Palembang-Prabumulih km 32, Indralaya, Indonesia.
  • Sarno Department of Biology, Faculty of Mathematics & Natural Sciences, Sriwijaya University. Jalan Raya Palembang-Prabumulih km 32, Indralaya, Indonesia
  • Nita Aminasih Department of Biology, Faculty of Mathematics & Natural Sciences, Sriwijaya University. Jalan Raya Palembang-Prabumulih km 32, Indralaya, Indonesia
  • Singgih Tri Wardana Department of Biology, Faculty of Mathematics & Natural Sciences, Sriwijaya University. Jalan Raya Palembang-Prabumulih km 32, Indralaya, Indonesia
  • Hary Widjajanti Department of Biology, Faculty of Mathematics & Natural Sciences, Sriwijaya University. Jalan Raya Palembang-Prabumulih km 32, Indralaya, Indonesia

Article Metrics

This article Abstract has been read: 1509 times
PDF Downloads: 943 times
Total Galley Downloads: 943 times
Total Views: 2452 times

DOI:

https://doi.org/10.24233/biov.9.1.2023.251

Keywords:

DNA Isolation , DNA Purity , DNA Barcoding , Lansium domesticum

Abstract

Lansium domesticum is one of tropical plant. Genetic studies of tropical plant species occurred very slowly due to some obstacles. Provided fresh sample for isolation step was one of impediment. Fresh sample was important conditions to avoid impure DNA template. A simple and rapid technique was needed to get a pure DNA from storage sample. The aims of this study is to see the purity of the DNA isolation results from Lansium domesti-cum mature leaf from South Sumatra that have been stored for 2 years and to test whether the DNA isolation results can be used for barcoding analysis by amplification using PCR method with rbcL primer. There are 11 sample of Lansium domesticum were taken from 8 districts in South Sumatra. The sample was the mature leaves of Lanisum domesticum. The leaves were stored in a freezer at -20oC for two years. There was one sam-ple stored within 2 weeks as a comparison. The results of the study showed the isolation of DNA from storage and mature leaves of Lansium domesticum used Plant Genomic DNA Kit DP305 had a good quantity for 7 sample. 3 sample had low purity and 1 sample contaminated by RNA.  Despite electrophoresis showed the isola-tion result not intact and compact, nevertheless the PCR results showed 11 samples could be amplified using rbcL primer. This result indicated the DNA isolation method suit for barcoding analysis using PCR method.

Last Year PDF Downloads

Download data is not yet available.

References

T.K. Lim. Edible Medicinal and Non-Medicinal Plants Volume 3, Fruits. Inggris: Springer, 2012. DOI: https://doi.org/10.1007/978-94-007-1764-0

K. S. Yulita, “Genetic variations of Lansium domesticum Corr. accessions from Java, Sumatra and Ceram based on Random Amplified Poly-morphic DNA fingerprints”, Biodiversitas. Vol.I2, No.3, PP. 125-130, 2011. DOI: https://doi.org/10.13057/biodiv/d120301

Rupiah, L. Hanum, Z. P. Negara, Z. Dahlan, and I. Yustian, “Morphological Diversity of Lansium domesticum Corr in South Sumatera”, Science and Technology Indonesia. Vol.3. No.1. PP. 41-44. 2018. DOI: https://doi.org/10.26554/sti.2018.3.1.41-44

M. Restu, Mukrimin and Gusmiaty, “Optimalisasi Teknik Ekstraksi dan Isolasi DNA Suren (Toona sureni Merr.) untuk Analisis Keragaman Genetik berdasarkan Random Amplified Polymorphic DNA (RAPD)”, Jurnal Natur Indonesia. Vol.14, No.2. 138-142, 2012 DOI: https://doi.org/10.31258/jnat.14.1.138-142

F. Hindayani, R. A. Wulandari and R.H. Murti, “Genomic DNA Extraction Method from Mayure Leaf of Lai (Durio kutejensis Becc.)”, Agrivita. Vol. 38, No. 1, PP. 73-79, 2016.

S.K. Sahu, M. Thangaraj and K. Kathiresan, “DNA Extraction Protocol for Plants with High Level of Secondary Metabolites and Polysaccha-rides without Using Liquid Nitrogen and Phe-nol”, International Scholary Research Notices, Vol.2012, PP. 1-6, 2012. DOI: https://doi.org/10.5402/2012/205049

N.A. Aboul-Maaty and H. A. Oraby, “Extraction of high-quality genomic DNA from Different Plant Orders Applying a Modified CTAB-based Method”. Bulletin of National Research Centre, Vol.43, No.25. PP. 1-10, 2019. DOI: https://doi.org/10.1186/s42269-019-0066-1

Y. Shavrokov, N. Borisjuk and N. K. Gupta, “Plant Genetics and gene Study”, BioMed Re-search International. Vol. 2019. PP. 1-2, 2019. DOI: https://doi.org/10.1155/2019/3560374

S. C. Tan and B. C. Tiap, “DNA, RNA and Protein Extraction: The Past and The Present”, Journal of Biomedicin and Biotechnology, Vol. 2009. PP. 1-10, 2009. DOI: https://doi.org/10.1155/2009/574398

M. S. A. Tuffaha. Phenotypic and Genotypic Diagnosis of Malignancies an Immunohisto-chemical and Molecular Approach. German: Wiley Publishers, 2008. DOI: https://doi.org/10.1002/9783527621521

P.Y. Lee, J. Costumbrado, C. Y. Hsu and Y. H. Kim, “Agarose Gel Electrophoresis for The Separation of DNA Fragments”, Journal of Vis-ualized Experiment. No.62. PP. 1-5. 2012. DOI: https://doi.org/10.3791/3923-v

W.J. Kress dan D. L. Erickson, “A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region”, PLoS ONE. Vol. 2. No.6. PP. 1-10, 2007. DOI: https://doi.org/10.1371/journal.pone.0000508

E. Harnelly, Z. Thomy and N. Fathiya, “Phy-logenetic Analysis of Dipterocarpaceae in Ket-ambe Research Station, Gunung Leuser National Park (Sumatera, Indonesia) based on rbcL and matK gene”, Biodiversitas. Vol.19. No.3. PP. 1074-1080, 2018. DOI: https://doi.org/10.13057/biodiv/d190340

R. E. Farrel. RNA Methodologies a Laboratory Guide for Isolation and Characterization Fourth Edi-tion. America: Elsevier Science, 2009.

J. T. Keer and L. Brich. Essentials of Nucleic Acid Analysis a Robust Approuch. UK: Royal Society of Chemistry, 2008. DOI: https://doi.org/10.1039/9781847558213

S. M. M. Nzilibili, M. K. H. Ekodiyanto, P. Hardjanto and A. Yudianto, “Concentration and Purity DNA Spectrophotometer: Sodium Mono-fluorophosphate Forensic Impended Effect”, Egyptian Journal of Forensic Sciences. Vol.8. No. 34. PP. 1-7, 2018. DOI: https://doi.org/10.1186/s41935-018-0065-7

Y. Xia, F. Chen, T. Du, C. Liu, G. Bu, Y. Xin and B. Liu, “a Modified SDS-based DNA Ex-traction Method from Raw Soybean”, Biosci-ence Report. Vol.39. PP. 1-10, 2022. DOI: https://doi.org/10.1042/BSR20182271

O. Nath, S. J. Fletcher, A. Hayward, L. M. Shaw, R. Agarwal, A. Furtado, R. J. Henry and N. Mitter, “A Comprehensive High-Quality DNA and RNA Extraction Protocol for a Range of Cultivars and Tissue Types of The Woody Crop Avocado”, Plants. Vol.11. No.242. 1-17. 2022. DOI: https://doi.org/10.3390/plants11030242

V. Martida and M. Pharmawati, “Comparison of DNA Yield from Different Plant Materials of Plumeria sp. (Apocynaceae)”, Journal of Ad-vances in Tropical Biodiversity and Environ-mental Science. Vol.3. No.1. 8-11. 2019. DOI: https://doi.org/10.24843/ATBES.2019.v03.i01.p03

P.A. Moreira and D. A. Oliveira, “Leaf Age Affects the Quality of DNA Extracted from Di-morphandra mollis (Fabaceae), a Tropical Tree Species from The Cerrado Region of Brazil”, Genetic and Molecular Reasearch. Vol.10. No.1. PP. 353-358, 2011. DOI: https://doi.org/10.4238/vol10-1gmr1030

T. Wilkes. DNA Techniques to Verify Food Authenticity: DNA Extraction from Food Ma-trix. UK:Royal Society of Chemistry. 2019. DOI: https://doi.org/10.1039/9781788016025-00029

F. Handayani, R. A Wulandari and R. H. Murti, “Genomic DNA Extraction Method for Mature Leaf of Lai (Durio kutejensis Becc.)”, Agrivita. Vol.38. No.1. PP. 73-79, 2016. DOI: https://doi.org/10.17503/agrivita.v38i1.659

V. K. Sari and R. H Murti, “An Effective Method for DNA Extraction of Mature Leaf of Sapondilla (Manikara zapota (L,) van Royen)”, Agrivita. Vol 37 No.1. PP. 18-23, 2015 DOI: https://doi.org/10.17503/Agrivita-2015-37-1-p018-023

D.A. G Perwitasari, S. Rohimah, T. Ratnasari, B. Sugiharto and M. Su’ud, “DNA Barcoding of Medical Orchid Dendrobium dis-color Lindl. Tanimbar Using rbcL and ITS Gene”, Buletin Penelitian Tanaman Rempah dan Obat. Vol 31 No.1. PP. 8-20, 2020. DOI: https://doi.org/10.21082/bullittro.v31n1.2020.8-20

H. Shabrina, U. J. Siregar, D. D. Matra, K. Kamiya and I. Siregar, “Short Communication: DNA Extraction from Stored Wood of Falca-taria moluccana Suitable for Barcoding Anal-yasis”, Biodiversitas. Vol.20. No.6. PP. 148-153, 2019. DOI: https://doi.org/10.13057/biodiv/d200635

R. B. L Koh, C.F.C. Barbosa, V. M. Aquino, and L. C. Galvez, “Extraction of High Molecular Weight DNA Suitable for Next-Generation Se-quencing from The Fiber Crop Abaca”, Indus-trial Crops and Products. Vol.161. PP. 1-9, 2021. DOI: https://doi.org/10.1016/j.indcrop.2020.113194

L. Zang, B. Wang, L. Pan, and J. Peng, “Re-cycling Isolation of Plant DNA, A Novel Meth-od”, Journal of Genetics and Genomics. Vol.40. PP. 45-54, 2013. DOI: https://doi.org/10.1016/j.jgg.2012.10.001

P. W. Inglis, M. D. C. R. Pappas, L. V. Resende and D. Grattapaglia, “Fast and Inex-pensive Protocols for Consistent Extraction of High-Quality DNA and RNA from Challenging Plant and Fungal Samples for High-Throughput SNP Genotyping and Sequencing Applications”, Plos One. Vol.13. No.10. PP. 1-14, 2018. DOI: https://doi.org/10.1371/journal.pone.0206085

Y. Rachmawati and R. A. Khiriyah, “Com-parison of DNA Isolation Result using Simple Methods and Kits in Samples of Psidium guaja-va Leaves”, Biotropic the Journal of Tropical Biology. Vol.2. No.2. PP. 94-99, 2018. DOI: https://doi.org/10.29080/biotropic.2018.2.2.93-99

L. Hanum, Y. Windusari, A. Setiawan, Mu-harni, F. Adriansyah and A. A. Mubarok, “Com-parison of CTAB Method and Wizard Genomic DNA Purification System Kit for Promega on DNA Isolation of Local Varieties of Rice of South Sumatera”, Science and Technology Indo-nesia. Vol.3. PP. 26-29,2018. DOI: https://doi.org/10.26554/sti.2018.3.1.26-29

Published

02-05-2023

How to Cite
Write scientific names with Italic fonts:

Arifah, N., Hanum, L., Sarno, S., Aminasih, N., Wardana, S. T., & Widjajanti, H. (2023). ISOLATION AND PURITY DNA FROM LEAF STORAGE OF Lansium domesticum CORRESPOND FOR BARCODING ANALYSIS. BIOVALENTIA: Biological Research Journal, 9(1), 6–11. https://doi.org/10.24233/biov.9.1.2023.251

Issue

Section

Vol 9, No 1 (2023): May 2023

Most read articles by the same author(s)

1 2 > >>