CANDIDATE GENES IDENTIFICATION OF OIL PALM (Elaeis guineensis Jacq.) INTEREST CHARACTERS USING PUBLISHED DATABASE
DOI:
https://doi.org/10.24233/biov.7.1.2021.188Keywords:
homology , in-silico , known genes , production traits , oil palm , validationAbstract
Palm oil has supplied more than 30% of vegetable oil consumption worldwide. Rising demand has pushed oil palm plantations to increase the yield. It is well known that genetic has played a significant role in phenotypic performance. Moreover, in recent years, genomic data has emerged tremendously. Unfortunately on the gene related to oil palm yield. Therefore, a preliminary study to classify and select oil palm candidate genes associated with characteristic by scanning existing genes in oil palm or other in-silico species were conducted. Based on Blast2Go results, 22 genes related to oil biosynthesis, two specifically related to fruit number and fruit weight were analysed. Furthermore, 19 candidate genes were able to amplify.
Last Year PDF Downloads
References
S. Baud and L. Lepiniec, “Physiological and developmental regulation of seed oil production.,” Prog. Lipid Res., vol. 49, no. 3, pp. 235–249, 2010.
F. Bourgis, A. Kilaru, X. Cao, G.-F. Ngando-Ebongue, N. Drira, J. B. Ohlrogge, and V. Arondel, “Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning.,” Proc. Natl. Acad. Sci. U. S. A., vol. 108, no. 30, pp. 12527–12532, 2011.
L. Gao, Y. Wang, Z. Zhu, H. Chen, R. Sun, and Y. Zheng, “Industrial Crops & Products EgmiR5179 from the mesocarp of oil palm ( Elaeis guineensis Jacq .) regulates oil accumulation by targeting NAD transporter 1,” Ind. Crop. Prod., vol. 137, pp. 126–136, 2019.
L. S. Woittiez, M. T. Van Wijk, M. Slingerland, M. Van Noordwijk, and K. E. Giller, “Yield gaps in oil palm : A quantitative review of contributing factors,” Eur. J. Agron., vol. 83, pp. 57–77, 2017.
Q. Bin Kwong, C. K. Teh, A. L. Ong, F. T. Chew, S. Mayes, H. Kulaveerasingam, M. Tammi, S. H. Yeoh, D. R. Appleton, and J. A. Harikrishna, “Evaluation of methods and marker Systems in Genomic Selection of oil palm ( Elaeis guineensis Jacq .),” BMC Genet., vol. 18, no. 107, pp. 1–9, 2017.
S. P. Moose and R. H. Mumm, “Molecular Plant Breeding as the Foundation for 21st Century Crop Improvement,” Plant Physiol., vol. 147, pp. 969–977, 2008.
A. Dimitrijevic, R. Horn, and R. A. Heinz, “Sunflower Hybrid Breeding : From Markers to Genomic Selection,” Front. Plant Sci., vol. 8, pp. 1–20, 2018.
Anonym. https://www.arabidopsis.org. Accessed on 18 March 2021.
R. Singh, M. Ong-Abdullah, E.-T. L. Low, M. A. A. Manaf, R. Rosli, R. Nookiah, L. C.-L. Ooi, S.-E. Ooi, K. L. Chan, M. A. Halim, N. Azizi, J. Nagappan, B. Bacher, N. Lakey, S. W. Smith, D. He, M. Hogan, M. A. Budiman, E. K. Lee, R. DeSalle, D. Kudrna, J. L. Goicoechea, R. A. Wing, R. K. Wilson, R. S. Fulton, J. M. Ordway, R. A. Martienssen, and R. Sambanthamurthi, “Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds.,” Nature, vol. 500, no. 7462, pp. 335–340, 2013.
R. F. Saputra, A. Setiawan, I. Yustian, and E. Patriono, “DNA Extraction of Sumatran Striped Rabbit from Tissue Samples,” BIOVALENTIA Biol. Res. J., vol. 5, no. 2, pp. 46–49, 2019.
S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipmanl, “Basic Local Alignment Search Tool,” Mol. Biol., vol. 215, pp. 403–410, 1990.
E. L. de Armentia, “Mapeo por asociación mediante genes candidatos en Palmera de Aceite Africana ( E. guineensis Jacq.),” 2017.
M. Astorkia, M. Hernandez, S. Bocs, K. Ponce, O. Leon, S. Morales, Q. Nathalie, O. Francisco, F. Wendra, Z. Sembiring, D. Asmono, and E. Ritter, “Analysis of the allelic variation in the Shell gene homolog of E . oleifera and design of species specific Shell primers,” Euphytica, vol. 216, no. 6, pp. 1–16, 2020.
U. Malapelle, E. Vigliar, R. Sgariglia, C. Bellevicine, L. Colarossi, D. Vitale, P. Pallante, and G. Troncone, “Ion Torrent next-generation sequencing for routine identi fi cation of clinically relevant mutations in colorectal cancer patients,” J. Clin. Phatology, vol. 0, pp. 1–5, 2014.
C. T. Krannich, L. Maletzki, C. Kurowsky, and R. Horn, “Network candidate genes in breeding for drought tolerant crops,” Int. J. Mol. Sci., vol. 16, no. 7, pp. 16378–16400, 2015.
M. Astorkia, M. Hernandez, S. Bocs, E. L. De Armentia, A. Herran, K. Ponce, O. Leon, S. Morales, N. Quezada, F. Orellana, F. Wendra, Z. Sembiring, D. Asmono, and E. Ritter, “Association Mapping Between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids,” Plants, vol. 8, no. 377, pp. 1–18, 2019.
S. Daba, R. D. Horsley, P. Schwarz, S. Chao, F. Capettini, and M. Mohammadi, “Association and genome analyses to propose putative candidate genes for malt quality traits,” J. Sci. Food Agric., vol. 99, no. 765, pp. 2775–2785, 2018.
P. Erika, “Candidate Genes Detection of Oil Production Traits in Elaeis guineensis Jacq. Populations from South Sumatera, Indonesia”, Unpublished Master Thesis. Universidad del Pais Vasco. 2014.
M. Krallinger, A. Valencia, and L. Hirschman, “Linking genes to literature: text mining, information extraction, and retrieval applications for biology,” Genome Biol., vol. 9, no. 2, p. S8, 2008.
T. J. Tranbarger, S. Dussert, T. Joe, X. Argout, M. Summo, A. Champion, D. Cros, A. Omore, B. Nouy, and F. Morcillo, “Regulatory Mechanisms Underlying Oil Palm Fruit Mesocarp Maturation, Ripening, and Functional Specialization in Lipid and Carotenoid Metabolism 1 [W][OA],” Plant Pathol., vol. 156, no. 2, pp. 564–584, 2011.
J. Ohlroggeav and J. Browseb, “Lipid Biosynthesis,” Plant Cell, vol. 7, pp. 957–970, 1995.
X. Xu, H. Yang, S. P. Singh, P. J. Sharp, and Q. Liu, “Genetic Manipulation of Non-Classic Oilseed Plants for Enhancement of Their Potential as a Biofactory for Triacylglycerol Production,” Engineering, vol. 4, no. 4, pp. 523–533, 2018.
PDF Downloads: 169
Published
How to Cite
Write scientific names with Italic fonts:
Issue
Section
Copyright (c) 2021 Upit Sarimana, Dwi Putro Priadi, Mery Hasmeda, Pratiwi Erika, Javier Herrero, Baitha Santika, Fahmi Wendra, Zulhermana Sembiring, Dwi Asmono
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Authors who publish with this journal agree to the following terms:
a. Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution-ShareAlike 4.0 International License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
b. Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
c. Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).
d. Authors hold the copyright and retain publishing right of articles without restrictions.